Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Regulation Of Transcription, Dna-Dependent (GO:0045449) Genes Targeted by hsa-mir-409-3p in SRS Ovarian Hendrix Cluster 1 Table contains all genes in the SRS Ovarian Hendrix cluster number 1. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-409-3p GO:0045449 10693 CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:1621] zzz999 7570 ZNF22 zinc finger protein 22 (KOX 15) [Source:HGNC Symbol;Acc:13012] zzz999 Yes 55737 VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13487] zzz999 7639 ZNF85 zinc finger protein 85 [Source:HGNC Symbol;Acc:13160] zzz999 Yes 9172 MYOM2 myomesin (M-protein) 2, 165kDa [Source:HGNC Symbol;Acc:7614] zzz999 10916 MAGED2 melanoma antigen family D, 2 [Source:HGNC Symbol;Acc:16353] zzz999 10810 WASF3 WAS protein family, member 3 [Source:HGNC Symbol;Acc:12734] zzz999 23039 XPO7 exportin 7 [Source:HGNC Symbol;Acc:14108] zzz999 9498 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034] T 1837 DTNA dystrobrevin, alpha [Source:HGNC Symbol;Acc:3057] zzz999 3516 RBPJ recombination signal binding protein for immunoglobulin kappa J region [Source:HGNC Symbol;Acc:5724] zzz999 Yes 5981 RFC1 replication factor C (activator 1) 1, 145kDa [Source:HGNC Symbol;Acc:9969] zzz999 Yes 5567 PRKACB protein kinase, cAMP-dependent, catalytic, beta [Source:HGNC Symbol;Acc:9381] P T 3945 LDHB lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] zzz999 10575 CCT4 chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617] T 10329 TMEM5 transmembrane protein 5 [Source:HGNC Symbol;Acc:13530] zzz999 5569 PKIA protein kinase (cAMP-dependent, catalytic) inhibitor alpha [Source:HGNC Symbol;Acc:9017] zzz999 Yes 55832 CAND1 cullin-associated and neddylation-dissociated 1 [Source:HGNC Symbol;Acc:30688] P T Yes 3479 IGF1 insulin-like growth factor 1 (somatomedin C) [Source:HGNC Symbol;Acc:5464] P T Yes 7991 TUSC3 tumor suppressor candidate 3 [Source:HGNC Symbol;Acc:30242] zzz999 4908 NTF3 neurotrophin 3 [Source:HGNC Symbol;Acc:8023] zzz999 Yes 220988 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] T 57336 ZNF287 zinc finger protein 287 [Source:HGNC Symbol;Acc:13502] zzz999 Yes 80108 ZFP2 zinc finger protein 2 homolog (mouse) [Source:HGNC Symbol;Acc:26138] zzz999 Yes 55859 BEX1 brain expressed, X-linked 1 [Source:HGNC Symbol;Acc:1036] zzz999 3178 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] zzz999 2259 FGF14 fibroblast growth factor 14 [Source:HGNC Symbol;Acc:3671] zzz999 10713 USP39 ubiquitin specific peptidase 39 [Source:HGNC Symbol;Acc:20071] zzz999 5947 RBP1 retinol binding protein 1, cellular [Source:HGNC Symbol;Acc:9919] zzz999 57684 ZBTB26 zinc finger and BTB domain containing 26 [Source:HGNC Symbol;Acc:23383] zzz999 Yes 10920 COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) [Source:HGNC Symbol;Acc:24335] zzz999 6638 SNRPN small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] zzz999 4239 MFAP4 microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:7035] zzz999 83448 PUS7L pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Source:HGNC Symbol;Acc:25276] zzz999 7691 ZNF132 zinc finger protein 132 [Source:HGNC Symbol;Acc:12916] zzz999 Yes 56271 BEX4 brain expressed, X-linked 4 [Source:HGNC Symbol;Acc:25475] zzz999 727708 zzz999 zzz999 zzz999 56681 SAR1A SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] T 51665 ASB1 ankyrin repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:16011] zzz999 5281 PIGF phosphatidylinositol glycan anchor biosynthesis, class F [Source:HGNC Symbol;Acc:8962] zzz999 9508 ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:HGNC Symbol;Acc:219] T 23556 PIGN phosphatidylinositol glycan anchor biosynthesis, class N [Source:HGNC Symbol;Acc:8967] T 5962 RDX radixin [Source:HGNC Symbol;Acc:9944] P T 7761 ZNF214 zinc finger protein 214 [Source:HGNC Symbol;Acc:13006] T Yes 5636 PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 [Source:HGNC Symbol;Acc:9467] zzz999 29105 C16orf80 chromosome 16 open reading frame 80 [Source:HGNC Symbol;Acc:29523] zzz999 55906 ZC4H2 zinc finger, C4H2 domain containing [Source:HGNC Symbol;Acc:24931] zzz999 7046 TGFBR1 transforming growth factor, beta receptor 1 [Source:HGNC Symbol;Acc:11772] T Yes 23132 RAD54L2 RAD54-like 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:29123] zzz999 7552 ZNF711 zinc finger protein 711 [Source:HGNC Symbol;Acc:13128] P T Yes 11013 TMSB15A thymosin beta 15a [Source:HGNC Symbol;Acc:30744] zzz999 10795 ZNF268 zinc finger protein 268 [Source:HGNC Symbol;Acc:13061] zzz999 Yes 8749 ADAM18 ADAM metallopeptidase domain 18 [Source:HGNC Symbol;Acc:196] zzz999 24141 C20orf103 chromosome 20 open reading frame 103 [Source:HGNC Symbol;Acc:16097] zzz999 7637 ZNF84 Zinc finger protein 84 [Source:UniProtKB/Swiss-Prot;Acc:P51523] zzz999 Yes 11036 GTF2A1L general transcription factor IIA, 1-like [Source:HGNC Symbol;Acc:30727] zzz999 Yes 7580 ZNF32 zinc finger protein 32 [Source:HGNC Symbol;Acc:13095] zzz999 Yes 57498 KIDINS220 kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508] zzz999 56947 MFF mitochondrial fission factor [Source:HGNC Symbol;Acc:24858] T 7520 XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) [Source:HGNC Symbol;Acc:12833] T Yes 10625 IVNS1ABP influenza virus NS1A binding protein [Source:HGNC Symbol;Acc:16951] zzz999 55037 PTCD3 Pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:24717] T 55915 LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) [Source:HGNC Symbol;Acc:6509] T Yes 6419 SETMAR SET domain and mariner transposase fusion gene [Source:HGNC Symbol;Acc:10762] zzz999 8110 DPF3 D4, zinc and double PHD fingers, family 3 [Source:HGNC Symbol;Acc:17427] T Yes 93973 ACTR8 ARP8 actin-related protein 8 homolog (yeast) [Source:HGNC Symbol;Acc:14672] zzz999 55140 ELP3 elongation protein 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20696] zzz999 Yes 7334 UBE2N ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) [Source:HGNC Symbol;Acc:12492] T Yes 5926 ARID4A AT rich interactive domain 4A (RBP1-like) [Source:HGNC Symbol;Acc:9885] zzz999 Yes 26052 DNM3 dynamin 3 [Source:HGNC Symbol;Acc:29125] T 7699 ZNF140 zinc finger protein 140 [Source:HGNC Symbol;Acc:12925] zzz999 Yes 7746 ZNF193 zinc finger protein 193 [Source:HGNC Symbol;Acc:12984] zzz999 Yes 6296 ACSM3 acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522] zzz999 8341 HIST1H2BN histone cluster 1, H2bn [Source:HGNC Symbol;Acc:4749] zzz999 27316 RBMX RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] zzz999 6299 SALL1 sal-like 1 (Drosophila) [Source:HGNC Symbol;Acc:10524] P T Yes 10314 LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) [Source:HGNC Symbol;Acc:6508] T 79009 DDX50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Source:HGNC Symbol;Acc:17906] zzz999 23708 GSPT2 G1 to S phase transition 2 [Source:HGNC Symbol;Acc:4622] zzz999 10664 CTCF CCCTC-binding factor (zinc finger protein) [Source:HGNC Symbol;Acc:13723] zzz999 Yes 79742 CXorf36 chromosome X open reading frame 36 [Source:HGNC Symbol;Acc:25866] T 23411 SIRT1 sirtuin 1 [Source:HGNC Symbol;Acc:14929] P T Yes 11163 NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 [Source:HGNC Symbol;Acc:8051] T 7919 DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917] zzz999 64427 TTC31 tetratricopeptide repeat domain 31 [Source:HGNC Symbol;Acc:25759] zzz999 7694 ZNF135 zinc finger protein 135 [Source:HGNC Symbol;Acc:12919] zzz999 Yes 2053 EPHX2 epoxide hydrolase 2, cytoplasmic [Source:HGNC Symbol;Acc:3402] zzz999 4148 MATN3 matrilin 3 [Source:HGNC Symbol;Acc:6909] T 23506 KIAA0240 KIAA0240 [Source:HGNC Symbol;Acc:21111] T 79800 ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 [Source:HGNC Symbol;Acc:14435] zzz999 Yes 5903 RANBP2 RAN binding protein 2 [Source:HGNC Symbol;Acc:9848] zzz999 51340 CRNKL1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) [Source:HGNC Symbol;Acc:15762] zzz999

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